> a <- factor(letters)
> a
[1] a b c d e f g h i j k l m n o p q r s t u v w x y z
Levels: a b c d e f g h i j k l m n o p q r s t u v w x y z
## Now, even though b only includes five letters,
## all 26 are listed in the levels
> b <- a[1:5]
> b
[1] a b c d e
Levels: a b c d e f g h i j k l m n o p q r s t u v w x y z
## This behavior can be changed using the following syntax:
> b <- a[1:5,drop = TRUE]
> b
[1] a b c d e
Levels: a b c d e
Another way to deal with this is to use the dropUnusedLevels() command in the Hmisc library. The only issue here is that behavior is changed globally which may have undesired consequences (see the post listed above).
****UPDATE****
As Jeff Hollister mentions in the comments, there is another way to do this:
a<-factor(letters)
b<-factor(a[1:5])
Yet another way, if you are working with data frames that by default convert characters into factors, was suggested on r-sig-ecology by Hadley Wickham:
options(stringsAsFactors = FALSE)
a <-data.frame("alpha"=letters)
b<-a[1:5]